.. pySODM documentation master file, created by
   sphinx-quickstart on Mon May  4 17:31:32 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to pySODM's documentation
========================================

.. toctree::
   :caption: Getting started
   :maxdepth: 1

   Introduction <introduction.md>
   Installation <installation.md>
   
.. toctree::
   :caption: Tutorials
   :maxdepth: 1

   Quickstart <quickstart.md>
   Modeling and calibration workflow <workflow.md>

.. toctree::
   :caption: Case studies
   :maxdepth: 1

   Enzyme kinetics <enzyme_kinetics.md>
   Influenza 2017-2018 <influenza_1718.md>
   Additional references <references.md>

.. toctree::
   :caption: User guide
   :maxdepth: 1

   Models <models.md>
   Optimization <optimization.md>
   Speeding up models <speedup.md>
   
.. toctree::
   :caption: Developer guide
   :maxdepth: 1

   Start to collaborate <start_to_collaborate.md>
   Contribution guidelines <guidelines.md>
   Git workflow <git_workflow.md>
   License <license>

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`